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    LOC100129526 protein tyrosine phosphatase receptor type D pseudogene [ Homo sapiens (human) ]

    Gene ID: 100129526, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100129526
    Gene description
    protein tyrosine phosphatase receptor type D pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100129526 in Genome Data Viewer
    Location:
    5q23.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (117717325..117719947, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (118229696..118232319, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (117053020..117055642, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 992 Neighboring gene uncharacterized LOC124900192 Neighboring gene uncharacterized LOC124901050 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:116868532-116869048 Neighboring gene long intergenic non-protein coding RNA 2147 Neighboring gene RPL7L1 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22956 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:117309435-117310052 Neighboring gene uncharacterized LOC124901051

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016322.2 

      Range
      101..2723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      117717325..117719947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      118229696..118232319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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