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    LOC100130602 regulation of nuclear pre-mRNA domain containing 1A pseudogene [ Homo sapiens (human) ]

    Gene ID: 100130602, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100130602
    Gene description
    regulation of nuclear pre-mRNA domain containing 1A pseudogene
    See related
    Ensembl:ENSG00000261835
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100130602 in Genome Data Viewer
    Location:
    16q12.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (50046458..50047862)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (55844208..55845612)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (50080369..50081773)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7464 Neighboring gene nuclear receptor coactivator 5 like, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50006784-50007284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50007285-50007785 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7465 Neighboring gene NANOG hESC enhancer GRCh37_chr16:50055403-50055909 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:50058825-50059326 Neighboring gene CTD nuclear envelope phosphatase 1 regulatory subunit 1 Neighboring gene MPRA-validated peak2585 silencer Neighboring gene MPRA-validated peak2586 silencer Neighboring gene MPRA-validated peak2587 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50080479-50080979 Neighboring gene HEATR3 antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:50094586-50094761 Neighboring gene Sharpr-MPRA regulatory region 4020 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7468 Neighboring gene actin gamma 1 pseudogene 16 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7469 Neighboring gene HEAT repeat containing 3 Neighboring gene MPRA-validated peak2588 silencer Neighboring gene RNY4 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_022520.2 

      Range
      9..1413
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      50046458..50047862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      55844208..55845612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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