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    LOC390250 RNA polymerase II, I and III subunit E pseudogene [ Homo sapiens (human) ]

    Gene ID: 390250, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC390250
    Gene description
    RNA polymerase II, I and III subunit E pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC390250 in Genome Data Viewer
    Location:
    11q22.3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (110049521..110050353)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (110059851..110060683)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (109920246..109921078)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369484 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5495 Neighboring gene ribosomal protein SA pseudogene 50 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:109892785-109893984 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5497 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3882 Neighboring gene Sharpr-MPRA regulatory region 12390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5499 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3884 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3885 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3883 Neighboring gene zinc finger CCCH-type containing 12C Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:109998850-109999372 Neighboring gene VISTA enhancer hs1311 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:110044207-110045122 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:110052423-110053111 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5500 Neighboring gene Sharpr-MPRA regulatory region 13162 Neighboring gene MPRA-validated peak1465 silencer Neighboring gene radixin Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:110166436-110167308

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • RNA polymerase II subunit E pseudogene
    • polymerase (RNA) II subunit E pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021833.2 

      Range
      101..933
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      110049521..110050353
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      110059851..110060683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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