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    LOC554206 leucine carboxyl methyltransferase 1 pseudogene [ Homo sapiens (human) ]

    Gene ID: 554206, updated on 22-Oct-2024

    Summary

    Gene symbol
    LOC554206
    Gene description
    leucine carboxyl methyltransferase 1 pseudogene
    See related
    Ensembl:ENSG00000291179
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LOC554206 in Genome Data Viewer
    Location:
    16p12.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (25031741..25032777)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (25311354..25312390)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (25043062..25044098)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 17 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:24999769-25000372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10601 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:25025578-25026246 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:25026247-25026915 Neighboring gene thyroid hormone receptor interactor 11 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr16:25033996-25034167 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10602 Neighboring gene Sharpr-MPRA regulatory region 2109 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7294 Neighboring gene long intergenic non-protein coding RNA 2175 Neighboring gene SCML2 pseudogene 2

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038379.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI553759, AI696363, BC029609, BX116226, DB115487
      Related
      ENST00000619106.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      25031741..25032777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      25311354..25312390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)