U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PNKDP1 PNKD pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 100506715, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PNKDP1provided by HGNC
    Official Full Name
    PNKD pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:49628
    See related
    AllianceGenome:HGNC:49628
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PNKDP1 in Genome Data Viewer
    Location:
    Xq26.2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (131803129..131803756, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (130127355..130127982, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (130937157..130937784, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:130798263-130798901 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21000 Neighboring gene heparin binding growth factor pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29949 Neighboring gene Sharpr-MPRA regulatory region 5272 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:130851242-130851768 Neighboring gene MPRA-validated peak7427 silencer Neighboring gene NANOG hESC enhancer GRCh37_chrX:130854476-130855009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29953 Neighboring gene firre intergenic repeating RNA element Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29954 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29958 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29959 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29962 Neighboring gene Sharpr-MPRA regulatory region 13451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29963 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29964 Neighboring gene Sharpr-MPRA regulatory region 4069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130937096-130937596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130937597-130938097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29965 Neighboring gene Sharpr-MPRA regulatory region 13107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21002 Neighboring gene MAPK regulated corepressor interacting protein 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29967 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130960090-130960590 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:131057048-131058247 Neighboring gene RNA, 5S ribosomal pseudogene 514 Neighboring gene Sharpr-MPRA regulatory region 3545 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:131156878-131157424 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:131157425-131157972 Neighboring gene serine/threonine kinase 26

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    Markers

    Other Names

    • paroxysmal nonkinesigenic dyskinesia pseudogene

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_030161.3 

      Range
      101..728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      131803129..131803756 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      130127355..130127982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials