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    GABPAP GABPA pseudogene [ Homo sapiens (human) ]

    Gene ID: 8327, updated on 17-Sep-2024

    Summary

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    Official Symbol
    GABPAPprovided by HGNC
    Official Full Name
    GABPA pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:4072
    See related
    AllianceGenome:HGNC:4072
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    E4TF1; E4TF1B; GABPB1
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    Genomic context

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    See GABPAP in Genome Data Viewer
    Location:
    7q11.21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (63893249..63897908)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (65101129..65105788)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (63353627..63358286)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene translation machinery-associated protein 7 Neighboring gene uncharacterized LOC124901654 Neighboring gene long intergenic non-protein coding RNA 2848 Neighboring gene NMD3 ribosome export adaptor pseudogene 1 Neighboring gene uncharacterized LOC124901653 Neighboring gene uncharacterized LOC105375318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26054

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and localization to chromosome 7 of psihGABPalpha, a human processed pseudogene related to the ets transcription factor, hGABPalpha. Luo M, et al. Gene, 1999 Jun 24. PMID 10393246
    2. Regional mapping of two subunits of transcription factor E4TF1 to human chromosome. Sawada J, et al. Jpn J Cancer Res, 1995 Jan. PMID 7737900, Free PMC Article
    3. cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs. Watanabe H, et al. Mol Cell Biol, 1993 Mar. PMID 8441384, Free PMC Article
    4. Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval. Avery CL, et al. Pharmacogenomics J, 2014 Feb. PMID 23459443, Free PMC Article
    5. Molecular and genetic characterization of GABP beta. de la Brousse FC, et al. Genes Dev, 1994 Aug 1. PMID 7958862

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • GA binding protein transcription factor alpha subunit pseudogene
    • GA binding protein transcription factor, alpha subunit 60kDa pseudogene
    • GA binding protein transcription factor, beta subunit 1, 53kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007342.4 

      Range
      101..4760
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      63893249..63897908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      65101129..65105788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_002723.3: Suppressed sequence

      Description
      NR_002723.3: This RefSeq was permanently suppressed because it is now thought that this pseudogene is not transcribed.
    Nucleotide Protein
    Heading Accession and Version

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