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LOAG_04225 heparan sulfate 2-O-sulfotransferase [ Loa loa (eye worm) ]

Gene ID: 9941630, updated on 9-Nov-2023

Summary

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Gene symbol
LOAG_04225
Gene description
heparan sulfate 2-O-sulfotransferase
Locus tag
LOAG_04225
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Loa loa
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Filarioidea; Onchocercidae; Loa
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Genomic context

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Location:
chromosome: Unknown
Exon count:
7

NW_018108311.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene DNA-directed RNA polymerase Neighboring gene cleavage and polyadenylation specificity factor subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018108311.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_018108311.1 Reference assembly

    Range
    40059..43680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020446541.1 → XP_020303132.1  heparan sulfate 2-O-sulfotransferase [Loa loa]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1I7VEZ2, A0A1S0UJG1
    Conserved Domains (1) summary
    cl22970
    Location:57 → 307
    Sulfotransfer_2; Sulfotransferase family

  2. XM_020446542.1 → XP_020305845.1  heparan sulfate 2-O-sulfotransferase, variant [Loa loa]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1I7VEZ2, A0A1S0UJG1
    Conserved Domains (1) summary
    cl22970
    Location:57 → 307
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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