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OT_ostta12g02990 Tetratricopeptide repeat [ Ostreococcus tauri ]

Gene ID: 9836072, updated on 16-Nov-2023

Summary

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Gene symbol
OT_ostta12g02990
Gene description
Tetratricopeptide repeat
Locus tag
OT_ostta12g02990
Gene type
protein coding
RNA name
Tetratricopeptide repeat
RefSeq status
PROVISIONAL
Organism
Ostreococcus tauri (strain: RCC4221)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Old locus tag
Ot12g03020
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Genomic context

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See OT_ostta12g02990 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
1
Sequence:
Chromosome: 12; NC_014437.2 (499215..502055)

Chromosome 12 - NC_014437.2Genomic Context describing neighboring genes Neighboring gene Fumarate lyase, conserved site Neighboring gene Glucosidase II beta subunit-like Neighboring gene Chaperonin Cpn60 Neighboring gene RNase L inhibitor RLI, possible metal-binding domain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014437.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
  2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Tetratricopeptide repeat

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014437.2 Reference assembly

    Range
    499215..502055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003082400.1 → XP_003082448.1  Tetratricopeptide repeat [Ostreococcus tauri]

    See identical proteins and their annotated locations for XP_003082448.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q00XK7
    Conserved Domains (4) summary
    sd00006
    Location:311 → 339
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:236 → 269
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:202 → 267
    TPR_11; TPR repeat
    cl10013
    Location:507 → 868
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
Heading Accession and Version

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