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OT_ostta10g03130 Glycoside hydrolase, catalytic domain [ Ostreococcus tauri ]

Gene ID: 9832088, updated on 16-Nov-2023

Summary

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Gene symbol
OT_ostta10g03130
Gene description
Glycoside hydrolase, catalytic domain
Locus tag
OT_ostta10g03130
Gene type
protein coding
RNA name
Glycoside hydrolase, catalytic domain
RefSeq status
PROVISIONAL
Organism
Ostreococcus tauri (strain: RCC4221)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Old locus tag
Ot10g03210
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Genomic context

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See OT_ostta10g03130 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
1
Sequence:
Chromosome: 10; NC_014435.2 (515977..516981, complement)

Chromosome 10 - NC_014435.2Genomic Context describing neighboring genes Neighboring gene unnamed product Neighboring gene Oxidoreductase, molybdopterin-binding domain Neighboring gene Proteasome A-type subunit Neighboring gene Thioredoxin-like fold

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014435.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
  2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Glycoside hydrolase, catalytic domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014435.2 Reference assembly

    Range
    515977..516981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003081706.1 → XP_003081754.1  Glycoside hydrolase, catalytic domain [Ostreococcus tauri]

    See identical proteins and their annotated locations for XP_003081754.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1Y5I141, Q00ZK3
    Conserved Domains (2) summary
    pfam00704
    Location:92 → 305
    Glyco_hydro_18; Glycosyl hydrolases family 18
    cl10447
    Location:92 → 305
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...
Nucleotide Protein
Heading Accession and Version

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