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LOC9629233 probable xyloglucan 6-xylosyltransferase 1 [ Selaginella moellendorffii ]

Gene ID: 9629233, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9629233
Gene description
probable xyloglucan 6-xylosyltransferase 1
Locus tag
SELMODRAFT_135562
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
Also known as
GT34B1-2
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Genomic context

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See LOC9629233 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314398.1 (139844..141628, complement)

NW_003314398.1Genomic Context describing neighboring genes Neighboring gene phospholipase D alpha 1 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene receptor-like cytoplasmic kinase 185 Neighboring gene uncharacterized LOC9629460 Neighboring gene IQ domain-containing protein IQM5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314398 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 1
Names
glycosyltransferase CAZy family GT34-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314398.1 Reference v1.0

    Range
    139844..141628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002992527.2 → XP_002992573.1  probable xyloglucan 6-xylosyltransferase 1

    See identical proteins and their annotated locations for XP_002992573.1

    UniProtKB/TrEMBL
    D8RMV8, D8TAF0
    Conserved Domains (1) summary
    PLN03182
    Location:8 → 407
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials