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SCHCODRAFT_02642961 26S proteasome subunit P45 [ Schizophyllum commune H4-8 ]

Gene ID: 9593620, updated on 17-May-2024

Summary

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Gene symbol
SCHCODRAFT_02642961
Gene description
26S proteasome subunit P45
Locus tag
SCHCODRAFT_02642961
See related
FungiDB:SCHCODRAFT_02642961; VEuPathDB:SCHCODRAFT_02642961
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizophyllum commune H4-8 (strain: H4-8)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Schizophyllaceae; Schizophyllum
Old locus tag
SCHCODRAFT_238082
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Genomic context

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See SCHCODRAFT_02642961 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
6

NW_026089551.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glycoside hydrolase Neighboring gene NAD(P)-binding protein Neighboring gene uncharacterized protein Neighboring gene Yip1-domain-containing protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026089551.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. Marian IM, et al. mBio, 2022 Jun 28. PMID 35604096, Free PMC Article
  2. Genome sequence of the model mushroom Schizophyllum commune. Ohm RA, et al. Nat Biotechnol, 2010 Sep. PMID 20622885
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome subunit P45

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_026089551.1 Reference assembly

    Range
    543394..545355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003027257.2 → XP_003027303.1  26S proteasome subunit P45 [Schizophyllum commune H4-8]

    See identical proteins and their annotated locations for XP_003027303.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D8QIG2
    Conserved Domains (2) summary
    PTZ00361
    Location:1 → 446
    PTZ00361; 26 proteosome regulatory subunit 4-like protein; Provisional
    pfam00004
    Location:228 → 361
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
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