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ToRSVs2gp1 polyprotein [ Tomato ringspot virus ]

Gene ID: 956646, updated on 18-Aug-2023

Summary

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Gene symbol
ToRSVs2gp1
Gene description
polyprotein
Locus tag
ToRSVs2gp1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Tomato ringspot virus
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
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Genomic context

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Location:
segment: RNA 2
Sequence:
NC_003839.2 (76..5724)

NC_003839.2Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003839.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence and in vitro expression of the capsid protein gene of tobacco ringspot virus. Buckley B, et al. Virus Res, 1993 Dec. PMID 8109164
  2. Nucleotide sequence of tomato ringspot virus RNA-2. Rott ME, et al. J Gen Virol, 1991 Jul. PMID 1856689

GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: 439-441 second in-frame AUG. It's in a favourable Kozak context (tgcaatgga).

Repeated regions

  • Loc: 1735-2169 rpt_type = tandem , rpt_unit_range = 1737..1893 , rpt_unit_range = 1894..2052 , rpt_unit_range = 2053..2169

General protein information

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Preferred Names
polyprotein
Names
hypothetical peptide
movement protein
capsid protein
NP_620762.1
  • putative coat protein (60-62K) at the C-terminal region

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003839.2 Reference assembly

    Range
    76..5724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_620762.1 polyprotein [Tomato ringspot virus]

    See identical proteins and their annotated locations for NP_620762.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P25247
    UniProtKB/TrEMBL
    A0A097GWW8
    Conserved Domains (3) summary
    pfam03688
    Location:1668 → 1827
    Nepo_coat_C; Nepovirus coat protein, C-terminal domain
    pfam03689
    Location:1331 → 1421
    Nepo_coat_N; Nepovirus coat protein, N-terminal domain
    pfam03391
    Location:1497 → 1662
    Nepo_coat; Nepovirus coat protein, central domain

  2. NP_733971.2 hypothetical peptide

  3. NP_733972.2 movement protein

  4. NP_733973.1 capsid protein

    UniProtKB/TrEMBL
    A3FEN2
    Conserved Domains (3) summary
    pfam03688
    Location:348 → 507
    Nepo_coat_C; Nepovirus coat protein, C-terminal domain
    pfam03689
    Location:11 → 101
    Nepo_coat_N; Nepovirus coat protein, N-terminal domain
    pfam03391
    Location:177 → 342
    Nepo_coat; Nepovirus coat protein, central domain
Nucleotide Protein
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