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VDBG_07485 trehalose-phosphatase [ Verticillium alfalfae VaMs.102 ]

Gene ID: 9537255, updated on 21-Dec-2023

Summary

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Gene symbol
VDBG_07485
Gene description
trehalose-phosphatase
Locus tag
VDBG_07485
Gene type
protein coding
RNA name
trehalose-phosphatase
RefSeq status
PROVISIONAL
Organism
Verticillium alfalfae VaMs.102 (strain: VaMs.102)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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Genomic context

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See VDBG_07485 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
4

NW_003315029.1Genomic Context describing neighboring genes Neighboring gene conserved oligomeric Golgi complex subunit 5 Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315029.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fungal-type cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
trehalose-phosphatase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315029.1 Reference assembly

    Range
    189986..192649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003001980.1 → XP_003002026.1  trehalose-phosphatase [Verticillium alfalfae VaMs.102]

    See identical proteins and their annotated locations for XP_003002026.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C9SRG0
    Conserved Domains (3) summary
    cd03788
    Location:26 → 281
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    COG1877
    Location:297 → 566
    OtsB; Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
    pfam02358
    Location:318 → 562
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
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