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VDBG_01877 serine-threonine kinase receptor-associated protein [ Verticillium alfalfae VaMs.102 ]

Gene ID: 9535314, updated on 21-Dec-2023

Summary

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Gene symbol
VDBG_01877
Gene description
serine-threonine kinase receptor-associated protein
Locus tag
VDBG_01877
Gene type
protein coding
RNA name
serine-threonine kinase receptor-associated protein
RefSeq status
PROVISIONAL
Organism
Verticillium alfalfae VaMs.102 (strain: VaMs.102)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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Genomic context

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See VDBG_01877 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_003315037.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ubiquitin homeostasis protein lub1 Neighboring gene tRNA-Gly Neighboring gene transcription factor SPT8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315037.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SMN complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
serine-threonine kinase receptor-associated protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315037.1 Reference assembly

    Range
    1368025..1369272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003007643.1 → XP_003007689.1  serine-threonine kinase receptor-associated protein [Verticillium alfalfae VaMs.102]

    See identical proteins and their annotated locations for XP_003007689.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C9SBN4
    Conserved Domains (3) summary
    COG2319
    Location:8 → 291
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:67 → 115
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:15 → 291
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials