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sanA DUF218 domain-containing protein SanA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949003, updated on 19-Sep-2024

Summary

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Official Symbol
sanA
Official Full Name
DUF218 domain-containing protein SanA
Primary source
ECOCYC:EG12025
Locus tag
b2144
See related
ASAP:ABE-0007091
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2137; sfiXSt; yeiF
Summary
ydcF and ycbC (COG1434) and sanA and yjgQ (COG2949) are four members of the DUF218 superfamily (PF02698). [More information is available at EcoGene: EG12025]. sanA encodes an inner membrane protein which is likely to be involved in cell envelope barrier functions. [More information is available at EcoCyc: EG12025].
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Genomic context

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Sequence:
NC_000913.3 (2232878..2233597)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 3-hydroxypropanoate export protein YohJ Neighboring gene putative 3-hydroxypropanoate export protein YohK Neighboring gene cytidine/deoxycytidine deaminase Neighboring gene DUF2542 domain-containing protein YeiS Neighboring gene dihydropyrimidine dehydrogenase (NAD(+)) subunit PreT Neighboring gene dihydropyrimidine dehydrogenase (NAD(+)) subunit PreA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel RpoS-Dependent Mechanisms Strengthen the Envelope Permeability Barrier during Stationary Phase. Mitchell AM, et al. J Bacteriol, 2017 Jan 15. PMID 27821607, Free PMC Article
  2. Cloning and nucleotide sequence of the Escherichia coli cytidine deaminase (ccd) gene. Yang C, et al. Biochemistry, 1992 May 5. PMID 1567863
  3. The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Chao KL, et al. Proteins, 2008 Jul. PMID 18393394
  4. Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli. Phadtare S, et al. J Bacteriol, 2004 Oct. PMID 15466053, Free PMC Article
  5. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within response to carbon starvation EXP
Inferred from Experiment
more info
 PubMed 
acts_upstream_of_or_within response to xenobiotic stimulus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in outer membrane-bounded periplasmic space RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
DUF218 domain-containing protein SanA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2232878..2233597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416649.1 DUF218 domain-containing protein SanA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416649.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AHM1, W1F392
    Conserved Domains (1) summary
    PRK10834
    Location:1 → 239
    PRK10834; outer membrane permeability protein SanA
Nucleotide Protein
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