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rbsB ribose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948261, updated on 19-Sep-2024

Summary

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Official Symbol
rbsB
Official Full Name
ribose ABC transporter periplasmic binding protein
Primary source
ECOCYC:EG10815
Locus tag
b3751
See related
ASAP:ABE-0012264
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3745; prlB; rbsP
Summary
RbsB binds D-ribose and mediates chemotaxis to D-ribose through the Trg chemoreceptor. [More information is available at EcoGene: EG10815]. RbsABC is an ATP-dependent ribose transporter that is a member of the ATP-Binding Cassette (ABC) Superfamily of transporters . [More information is available at EcoCyc: EG10815].
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Genomic context

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Sequence:
NC_000913.3 (3936278..3937168)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ribose ABC transporter ATP binding subunit Neighboring gene ribose ABC transporter membrane subunit Neighboring gene ncRNA Neighboring gene ribokinase Neighboring gene DNA-binding transcriptional dual regulator RbsR Neighboring gene putative transporter HsrA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of a fluorescent nanosensor for ribose. Lager I, et al. FEBS Lett, 2003 Oct 9. PMID 14550551
  2. The role of ribose-binding protein in transport and chemotaxis in Escherichia coli K12. Galloway DR, et al. Arch Biochem Biophys, 1977 Dec. PMID 339843
  3. Functional mapping of the surface of Escherichia coli ribose-binding protein: mutations that affect chemotaxis and transport. Binnie RA, et al. Protein Sci, 1992 Dec. PMID 1304894, Free PMC Article
  4. 1.7 A X-ray structure of the periplasmic ribose receptor from Escherichia coli. Mowbray SL, et al. J Mol Biol, 1992 May 5. PMID 1583688
  5. The amino acid sequence of D-ribose-binding protein from Escherichia coli K12. Groarke JM, et al. J Biol Chem, 1983 Nov 10. PMID 6313683

See all (43) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate the molecular motion of ribose-binding protein (RBP).
    Title: Analysis of conformational motions and residue fluctuations for Escherichia coli ribose-binding protein revealed with elastic network models.
  2. Data suggest that complex RbsABC2 shares functional traits with both type I and type II importers.
    Title: In vitro reassembly of the ribose ATP-binding cassette transporter reveals a distinct set of transport complexes.
  3. N-terminus verified by Edman degradation on mature peptide
    Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables monosaccharide binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within D-ribose transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in D-ribose transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within D-ribose transmembrane transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in chemotaxis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive chemotaxis IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive chemotaxis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in membrane HDA PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribose ABC transporter periplasmic binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3936278..3937168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418207.1 ribose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418207.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9APC5
    Conserved Domains (1) summary
    PRK10653
    Location:1 → 295
    PRK10653; ribose ABC transporter substrate-binding protein RbsB
Nucleotide Protein
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