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yhjY putative outer membrane protein YhjY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948073, updated on 6-Oct-2023

Summary

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Gene symbol
yhjY
Gene description
putative outer membrane protein YhjY
Primary source
ASAP:ABE-0011589
Locus tag
b3548
See related
ECOCYC:EG12269
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3535
Summary
Predicted 30 aa signal peptide is consistent with an observed precursor cleavage, blocked by azide. [More information is available at EcoGene: EG12269].
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Genomic context

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Sequence:
NC_000913.3 (3712236..3712934, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphoethanolamine transferase EptB Neighboring gene putative transporter YhjX Neighboring gene 3-methyl-adenine DNA glycosylase I, constitutive Neighboring gene peptidyl-lysine N-acetyltransferase YiaC Neighboring gene biotin sulfoxide reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of RpoS (sigma(S))-regulated genes in Salmonella enterica serovar typhimurium. Ibanez-Ruiz M, et al. J Bacteriol, 2000 Oct. PMID 11004173, Free PMC Article
  2. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
  3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
  4. New Escherichia coli outer membrane proteins identified through prediction and experimental verification. Marani P, et al. Protein Sci, 2006 Apr. PMID 16522795, Free PMC Article
  5. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in outer membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative outer membrane protein YhjY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3712236..3712934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418004.4 putative outer membrane protein YhjY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418004.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1X3JAU1
    Conserved Domains (1) summary
    COG5571
    Location:1 → 232
    YhjY; Uncharacterized protein YhjY, contains autotransporter beta-barrel domain [General function prediction only]
Nucleotide Protein
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