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yfiH purine nucleoside phosphorylase YfiH [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947089, updated on 10-Oct-2024

Summary

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Official Symbol
yfiH
Official Full Name
purine nucleoside phosphorylase YfiH
Primary source
ECOCYC:EG12097
Locus tag
b2593
See related
ASAP:ABE-0008530
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2591; pgeF
Summary
Probable false positive lipoprotein prediction, Cys not conserved. [More information is available at EcoGene: EG12097].
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Genomic context

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Sequence:
NC_000913.3 (2734303..2735034, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 16S ribosomal RNA Neighboring gene ClpB80;chaperone protein ClpB Neighboring gene ncRNA Neighboring gene 23S rRNA pseudouridine(1911/1915/1917) synthase Neighboring gene outer membrane protein assembly factor BamD Neighboring gene ribosome-associated inhibitor A Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ClpB is the Escherichia coli heat shock protein F84.1. Squires CL, et al. J Bacteriol, 1991 Jul. PMID 2066329, Free PMC Article
  2. Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat shock sigma factor (sigma 32). Kitagawa M, et al. J Bacteriol, 1991 Jul. PMID 1906060, Free PMC Article
  3. A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli. Raychaudhuri S, et al. RNA, 1998 Nov. PMID 9814761, Free PMC Article
  4. FAMIN Is a Multifunctional Purine Enzyme Enabling the Purine Nucleotide Cycle. Cader MZ, et al. Cell, 2020 Jan 23. PMID 31978345, Free PMC Article
  5. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2'-deoxyadenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables S-methyl-5-thioadenosine phosphorylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables S-methyl-5-thioadenosine phosphorylase activity IEA
Inferred from Electronic Annotation
more info
  
enables adenosine deaminase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables copper ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables copper ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables purine-nucleoside phosphorylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within peptidoglycan metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
purine nucleoside phosphorylase YfiH
NP_417084.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2734303..2735034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417084.1 purine nucleoside phosphorylase YfiH [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417084.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAN5FDG5
    Conserved Domains (1) summary
    PRK10723
    Location:1 → 243
    PRK10723; polyphenol oxidase
Nucleotide Protein
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