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yphB putative aldose 1-epimerase YphB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947017, updated on 19-Sep-2024

Summary

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Official Symbol
yphB
Official Full Name
putative aldose 1-epimerase YphB
Primary source
ECOCYC:G7338
Locus tag
b2544
See related
ASAP:ABE-0008368
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2541
Summary
galM, yphB and yihR are paralogs. [More information is available at EcoGene: EG13463].
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Genomic context

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Sequence:
NC_000913.3 (2673816..2674688, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit Neighboring gene putative inner membrane protein Neighboring gene putative zinc-binding dehydrogenase YphC Neighboring gene putative ABC transporter membrane subunit YphD

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and characterization of a sulfoquinovose mutarotase using kinetic analysis at equilibrium by exchange spectroscopy. Abayakoon P, et al. Biochem J, 2018 Apr 16. PMID 29535276, Free PMC Article
  2. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables aldose 1-epimerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables racemase and epimerase activity, acting on carbohydrates and derivatives RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in galactose catabolic process via UDP-galactose IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in glucose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative aldose 1-epimerase YphB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2673816..2674688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417039.1 putative aldose 1-epimerase YphB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417039.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2H4TWC6, A0A376FY34, A0A8S7B801
    Conserved Domains (1) summary
    cd09021
    Location:11 → 286
    Aldose_epim_Ec_YphB; aldose 1-epimerase, similar to Escherichia coli YphB
Nucleotide Protein
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