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ydcJ DUF1338 domain-containing protein YdcJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945991, updated on 19-Sep-2024

Summary

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Official Symbol
ydcJ
Official Full Name
DUF1338 domain-containing protein YdcJ
Primary source
ECOCYC:G6738
Locus tag
b1423
See related
ASAP:ABE-0004750
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1417
Summary
AFMB Structural Genomics target Number 105 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13753].
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Genomic context

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Sequence:
NC_000913.3 (1495288..1496631)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene methyl-accepting chemotaxis protein Trg Neighboring gene DNA-binding transcriptional dual regulator YdcI Neighboring gene glucans biosynthesis protein D Neighboring gene DUF465 domain-containing protein YdcH

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and catalytic diversity within the amidohydrolase superfamily. Seibert CM, et al. Biochemistry, 2005 May 3. PMID 15850372
  2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF1338 domain-containing protein YdcJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1495288..1496631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415940.1 DUF1338 domain-containing protein YdcJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415940.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7HUY3, A0A8T6BKF3
    Conserved Domains (1) summary
    cd16348
    Location:8 → 313
    VOC_YdcJ_like; uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ
Nucleotide Protein
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