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ypjD oxidized nucleotide pyrophosphohydrolase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939022, updated on 12-Feb-2021

Summary

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Gene symbol
ypjD
Gene description
oxidized nucleotide pyrophosphohydrolase
Locus tag
BSU_22500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU22500
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Genomic context

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Sequence:
NC_000964.3 (2360155..2360490, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene N-acetyl-alpha-D-glucosaminyl L-malate deacetylase 1; malate N-acetylglucosamine N-acetyl hydrolase Neighboring gene methylglyoxal synthase Neighboring gene (4S)-4-hydroxy-2,3,4, 5-tetrahydro-(2S)-dipicolinic acid (HTPA) dehydratase reductase Neighboring gene putative integral inner membrane protein Neighboring gene sporulation septum-associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
oxidized nucleotide pyrophosphohydrolase
NP_390131.1
  • Evidence 1c: Function from experimental evidences in the studied genus; PubMedId: 16390452, 20529853, 20944217, 21733847, 24339782, 26920050, 28117687; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    2360155..2360490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_390131.1 oxidized nucleotide pyrophosphohydrolase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_390131.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    cd11531
    Location:7 → 100
    NTP-PPase_BsYpjD; Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain putative pyrophosphatase YpjD from Bacillus subtilis and its bacterial homologs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42979.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases