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yqjB putative L,D-transpeptidase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938684, updated on 6-Jun-2024

Summary

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Gene symbol
yqjB
Gene description
putative L,D-transpeptidase
Locus tag
BSU_23940
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU23940
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Genomic context

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Sequence:
NC_000964.3 (2488953..2489483, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative peptidase or deacylase Neighboring gene putative propionyl-CoA carboxylase beta chain Neighboring gene putative methylmalonyl-CoA epimerase Neighboring gene hypothetical protein Neighboring gene high affinity arginine ABC transporter (ATP-binding protein) Neighboring gene high affinity arginine ABC transporter (permease)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative L,D-transpeptidase
NP_390274.1
  • Evidence 3: Putative function from multiple computational evidences; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    2488953..2489483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_390274.1 putative L,D-transpeptidase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_390274.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4FYH6
    Conserved Domains (1) summary
    cd16913
    Location:28 → 151
    YkuD_like; L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P54539.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases