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lyxE D-lyxose ketol isomerase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938182, updated on 6-Oct-2023

Summary

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Gene symbol
lyxE
Gene description
D-lyxose ketol isomerase
Locus tag
BSU_04200
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU04200
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Genomic context

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Sequence:
NC_000964.3 (472585..473088)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative methyltransferase Neighboring gene putative dehydrogenase Neighboring gene putative ribosomal protein N-acetyltransferase Neighboring gene putative general stress protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The structure of a D-lyxose isomerase from the σB regulon of Bacillus subtilis. Marles-Wright J, et al. Proteins, 2011 Jun. PMID 21520290
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The crystal structure of YdaE was solved and the protein model was refined to 1.23 A resolution.
    Title: The structure of a D-lyxose isomerase from the σB regulon of Bacillus subtilis.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
D-lyxose ketol isomerase
NP_388301.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 10220166, 15805528, 21421786, 21520290; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388301.1 D-lyxose ketol isomerase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388301.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1JEJ9
    Conserved Domains (1) summary
    cd20308
    Location:5 → 164
    cupin_YdaE; D-lyxose isomerase YdaE, cupin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P96578.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases