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CC1G_13982 heat shock protein [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 9379935, updated on 17-May-2024

Summary

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Gene symbol
CC1G_13982
Gene description
heat shock protein
Locus tag
CC1G_13982
See related
FungiDB:CC1G_13982; VEuPathDB:CC1G_13982
Gene type
protein coding
RNA name
heat shock protein
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_13982 in Genome Data Viewer
Location:
chromosome: 2, map: unlocalized
Exon count:
8

NW_003307543.1Genomic Context describing neighboring genes Neighboring gene shq1 Neighboring gene anthranilate synthase Neighboring gene mitochondrial 37S ribosomal protein MRP4 Neighboring gene replication factor C Neighboring gene CoCAF-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307543.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heat shock protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables misfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to unfolded protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
heat shock protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307543.1 Reference assembly

    Range
    2701019..2703492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002911897.1 → XP_002911943.1  heat shock protein [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_002911943.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D6RKY9
    Conserved Domains (2) summary
    cd10233
    Location:9 → 384
    HSPA1-2_6-8-like_NBD; Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins
    pfam00012
    Location:9 → 607
    HSP70; Hsp70 protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
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