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CC1G_14673 tho2 protein [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 9378492, updated on 17-May-2024

Summary

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Gene symbol
CC1G_14673
Gene description
tho2 protein
Locus tag
CC1G_14673
See related
FungiDB:CC1G_14673; VEuPathDB:CC1G_14673
Gene type
protein coding
RNA name
tho2 protein
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_14673 in Genome Data Viewer
Location:
chromosome: 5, map: unlocalized
Exon count:
27

NW_003307540.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene GTP cyclohydrolase I Neighboring gene beta-glucosidase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307540.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of THO complex part of transcription export complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
tho2 protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307540.1 Reference assembly

    Range
    2161880..2171446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002911198.1 → XP_002911244.1  tho2 protein [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_002911244.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D6RMY8
    Conserved Domains (5) summary
    pfam08648
    Location:2197 → 2269
    DUF1777; Protein of unknown function (DUF1777)
    pfam11262
    Location:1471 → 1768
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam11732
    Location:1083 → 1156
    Thoc2; Transcription- and export-related complex subunit
    pfam12871
    Location:2177 → 2244
    PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term
    pfam16134
    Location:438 → 1077
    THOC2_N; THO complex subunit 2 N-terminus
Nucleotide Protein
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