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CC1G_14869 pre-mRNA splicing factor ini1 [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 9378434, updated on 17-May-2024

Summary

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Gene symbol
CC1G_14869
Gene description
pre-mRNA splicing factor ini1
Locus tag
CC1G_14869
See related
FungiDB:CC1G_14869; VEuPathDB:CC1G_14869
Gene type
protein coding
RNA name
pre-mRNA splicing factor ini1
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_14869 in Genome Data Viewer
Location:
chromosome: 7, map: unlocalized
Exon count:
6

NW_003307538.1Genomic Context describing neighboring genes Neighboring gene carnitine acetyl transferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307538.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
pre-mRNA splicing factor ini1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307538.1 Reference assembly

    Range
    1993857..1994762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002910846.1 → XP_002910892.1  pre-mRNA splicing factor ini1 [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_002910892.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D6RNX4
    Conserved Domains (1) summary
    pfam03660
    Location:75 → 148
    PHF5; PHF5-like protein
Nucleotide Protein
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