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gdpP phosphodiesterase acting on cyclic dinucleotides [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 937816, updated on 12-Feb-2021

Summary

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Gene symbol
gdpP
Gene description
phosphodiesterase acting on cyclic dinucleotides
Locus tag
BSU_40510
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU40510
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Genomic context

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Sequence:
NC_000964.3 (4163643..4165622, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative anion ABC transporter (permease) Neighboring gene putative glycosyl transferase Neighboring gene ribosomal protein L9 Neighboring gene putative integral inner membrane protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A σD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP in Bacillus subtilis. Luo Y, et al. Microbiology (Reading), 2012 Nov. PMID 22956758, Free PMC Article
  2. YybT is a signaling protein that contains a cyclic dinucleotide phosphodiesterase domain and a GGDEF domain with ATPase activity. Rao F, et al. J Biol Chem, 2010 Jan 1. PMID 19901023, Free PMC Article
  3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. sigmaD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP (YybT).
    Title: A σD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP in Bacillus subtilis.
  2. The B. subtilis protein YybT, a member of the COG3387 family proteins, exhibits phosphodiesterase activity toward cyclic dinucleotides.
    Title: YybT is a signaling protein that contains a cyclic dinucleotide phosphodiesterase domain and a GGDEF domain with ATPase activity.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
phosphodiesterase acting on cyclic dinucleotides
NP_391931.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 19901023, 19553197, 21257773, 21566650, 24465894, 24680501, 25616256, 26240071, 27150552, 28069645; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    4163643..4165622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_391931.1 phosphodiesterase acting on cyclic dinucleotides [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_391931.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    COG3887
    Location:1 → 657
    GdpP; c-di-AMP phosphodiesterase, consists of a GGDEF-like and DHH domains [Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P37484.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials