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xlyB phage PBSX; N-acetylmuramoyl-L-alanine amidase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936464, updated on 4-Feb-2024

Summary

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Gene symbol
xlyB
Gene description
phage PBSX; N-acetylmuramoyl-L-alanine amidase
Locus tag
BSU_12460
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU12460
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Genomic context

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Sequence:
NC_000964.3 (1317535..1318488)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene response regulator aspartate phosphatase Neighboring gene secreted inhibitor of the activity of phosphatase RapA (quorum sensing) Neighboring gene putative enzyme Neighboring gene phage PBSX; conserved hypothetical protein Neighboring gene phage PBSX; gamma-polyglutamate hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
phage PBSX; N-acetylmuramoyl-L-alanine amidase
NP_389128.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 8760915, 9555893; Product type h: extrachromosomal origin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389128.1 phage PBSX; N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389128.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1JI27
    Conserved Domains (3) summary
    COG5632
    Location:3 → 177
    CwlA; N-acetylmuramoyl-L-alanine amidase CwlA [Cell wall/membrane/envelope biogenesis]
    pfam01471
    Location:251 → 313
    PG_binding_1; Putative peptidoglycan binding domain
    pfam01476
    Location:179 → 222
    LysM; LysM domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O34391.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases