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ganA short chain beta-1,4-galacto-oligosaccharides beta-galactosidase (beta-galacto-pyranoside hydrolase) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936313, updated on 6-Jun-2024

Summary

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Gene symbol
ganA
Gene description
short chain beta-1,4-galacto-oligosaccharides beta-galactosidase (beta-galacto-pyranoside hydrolase)
Locus tag
BSU_34130
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU34130
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Genomic context

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Sequence:
NC_000964.3 (3503020..3505083, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene phosphoserine protein-phosphatase Neighboring gene endo-beta-1,4-galactanase Neighboring gene galacto-oligosaccharides (galactan) oligomer permease Neighboring gene galacto-oligosaccharides (galactan) oligomer permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bioinformatic, genetic, and biochemical evidence that some glycoside hydrolase family 42 beta-galactosidases are arabinogalactan type I oligomer hydrolases. Shipkowski S, et al. Appl Environ Microbiol, 2006 Dec. PMID 17056685, Free PMC Article
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. We provide evidence that a GHF42 enzyme, LacA acts a a beta-1,4-galactooligomerase in vivo contributing to utilization of galactan backbone of arabinogalactan I.
    Title: Bioinformatic, genetic, and biochemical evidence that some glycoside hydrolase family 42 beta-galactosidases are arabinogalactan type I oligomer hydrolases.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
short chain beta-1,4-galacto-oligosaccharides beta-galactosidase (beta-galacto-pyranoside hydrolase)
NP_391293.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 2104611, 9287030, 17056685, 27501980; Product type e: enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    3503020..3505083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_391293.1 short chain beta-1,4-galacto-oligosaccharides beta-galactosidase (beta-galacto-pyranoside hydrolase) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_391293.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1KBK3, D4G1N9
    Conserved Domains (1) summary
    COG1874
    Location:1 → 686
    GanA; Beta-galactosidase GanA [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases