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LOC9320279 S-alkyl-thiohydroximate lyase SUR1 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9320279, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9320279
Gene description
S-alkyl-thiohydroximate lyase SUR1
Locus tag
ARALYDRAFT_480895
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9320279 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (23958005..23960385, complement)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110229641 Neighboring gene uncharacterized LOC110230052 Neighboring gene uncharacterized LOC110230053 Neighboring gene UPF0725 protein At2g20620 Neighboring gene probable protein phosphatase 2C 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-alkyl-thiohydroximate lyase SUR1
Names
ROOTY/SUPERROOT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    23958005..23960385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021031916.1 → XP_020887575.1  S-alkyl-thiohydroximate lyase SUR1

    UniProtKB/TrEMBL
    D7L4I1
    Conserved Domains (1) summary
    PLN02187
    Location:1 → 462
    PLN02187; rooty/superroot1
Nucleotide Protein
Heading Accession and Version

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