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LOC9318945 ubiquitin carboxyl-terminal hydrolase 25 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9318945, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9318945
Gene description
ubiquitin carboxyl-terminal hydrolase 25
Locus tag
ARALYDRAFT_478859
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
UBP25
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Genomic context

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See LOC9318945 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (6032655..6036673, complement)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene diaminopimelate decarboxylase 1, chloroplastic Neighboring gene uncharacterized LOC9318944 Neighboring gene probable sugar phosphate/phosphate translocator At3g14410 Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 25
Names
ubiquitin-specific protease 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    6032655..6036673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021030422.1 → XP_020886081.1  ubiquitin carboxyl-terminal hydrolase 25

    UniProtKB/TrEMBL
    D7L345
    Conserved Domains (2) summary
    cd02661
    Location:23 → 333
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam10163
    Location:577 → 653
    EnY2; Transcription factor e(y)2
Nucleotide Protein
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