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LOC9314916 hydroxyproline O-galactosyltransferase HPGT3 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9314916, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9314916
Gene description
hydroxyproline O-galactosyltransferase HPGT3
Locus tag
ARALYDRAFT_901160
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9314916 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (4107816..4110872, complement)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110229465 Neighboring gene putative defensin-like protein 80 Neighboring gene putative defensin-like protein 67 Neighboring gene uncharacterized LOC110228851

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT3
Names
transferase, transferring glycosyl groups

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    4107816..4110872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002880624.2 → XP_002880670.1  hydroxyproline O-galactosyltransferase HPGT3

    See identical proteins and their annotated locations for XP_002880670.1

    UniProtKB/TrEMBL
    D7LKM6
    Conserved Domains (2) summary
    pfam13334
    Location:30 → 102
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:134 → 329
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_002332889.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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