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LOC9304111 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9304111, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9304111
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Locus tag
ARALYDRAFT_329750
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTPS5
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Genomic context

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See LOC9304111 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (11303348..11307385, complement)

NW_003302549.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110226952 Neighboring gene putative F-box protein At4g17780 Neighboring gene uncharacterized LOC9304112 Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302549.1 Reference v.1.0 Primary Assembly

    Range
    11303348..11307385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002870040.2 → XP_002870086.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    See identical proteins and their annotated locations for XP_002870086.1

    UniProtKB/TrEMBL
    D7MDE9
    Conserved Domains (1) summary
    cl28137
    Location:1 → 850
    Glyco_transf_20; Glycosyltransferase family 20

  2. XM_021018267.1 → XP_020873926.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    D7MDE9
    Conserved Domains (1) summary
    cl28137
    Location:1 → 850
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
Heading Accession and Version

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