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SNORD25 small nucleolar RNA, C/D box 25 [ Homo sapiens (human) ]

Gene ID: 9303, updated on 10-Oct-2023

Summary

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Official Symbol
SNORD25provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 25provided by HGNC
Primary source
HGNC:HGNC:10147
See related
Ensembl:ENSG00000275043 MIM:603224; AllianceGenome:HGNC:10147
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U25; RNU25
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Genomic context

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See SNORD25 in Genome Data Viewer
Location:
11q12.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62855565..62855631, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62844960..62845026, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (62623037..62623103, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4864 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62623439-62624412 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62624413-62625388 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:62625389-62626362 Neighboring gene small nucleolar RNA host gene 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:62626363-62627337 Neighboring gene small nucleolar RNA, C/D box 27 Neighboring gene small nucleolar RNA, C/D box 26 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:62628506-62629410 Neighboring gene solute carrier family 3 member 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:62634014-62634172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4865 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:62648644-62649843 Neighboring gene uncharacterized LOC124902683 Neighboring gene cholinergic receptor muscarinic 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic analysis of high-risk smoldering multiple myeloma. López-Corral L, et al. Haematologica, 2012 Sep. PMID 22331267, Free PMC Article
  2. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. Frey MR, et al. Histochem Cell Biol, 1997 Oct-Nov. PMID 9387929
  3. A mammalian gene with introns instead of exons generating stable RNA products. Tycowski KT, et al. Nature, 1996 Feb 1. PMID 8559254
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021
  5. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. Banks CA, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609421, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • RNA, U25 small nucleolar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002565.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF081279
    Related
    ENST00000365607.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    62855565..62855631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    62844960..62845026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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