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SNORD26 small nucleolar RNA, C/D box 26 [ Homo sapiens (human) ]

Gene ID: 9302, updated on 2-Nov-2024

Summary

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Official Symbol
SNORD26provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 26provided by HGNC
Primary source
HGNC:HGNC:10148
See related
Ensembl:ENSG00000276788 MIM:603225; AllianceGenome:HGNC:10148
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U26; RNU26
Summary
Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See SNORD26 in Genome Data Viewer
Location:
11q12.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62855292..62855366, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62844687..62844761, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (62622764..62622838, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:62621489-62622463 Neighboring gene small nucleolar RNA host gene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4864 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62623439-62624412 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62624413-62625388 Neighboring gene small nucleolar RNA, C/D box 28 Neighboring gene small nucleolar RNA, C/D box 27 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:62625389-62626362 Neighboring gene small nucleolar RNA, C/D box 25 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:62626363-62627337 Neighboring gene solute carrier family 3 member 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:62628506-62629410 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:62634014-62634172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4865 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:62648644-62649843

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. Frey MR, et al. Histochem Cell Biol, 1997 Oct-Nov. PMID 9387929
  2. A mammalian gene with introns instead of exons generating stable RNA products. Tycowski KT, et al. Nature, 1996 Feb 1. PMID 8559254
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021
  4. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. Banks CA, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609421, Free PMC Article
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • RNA, U26 small nucleolar

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002564.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    U40580
    Related
    ENST00000384147.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    62855292..62855366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    62844687..62844761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases
Research Materials