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LOC9271697 small ribosomal subunit protein uS17 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9271697, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9271697
Gene description
small ribosomal subunit protein uS17
Locus tag
OSNPB_070565100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1112_E08.123; OJ1773_H01.104
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Genomic context

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See LOC9271697 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22886712..22888729, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22657249..22659314, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343619 Neighboring gene small ribosomal subunit protein uS17 Neighboring gene uncharacterized LOC4343622 Neighboring gene uncharacterized LOC4343623

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS17
Names
Os07g0565100
putative 40S ribosomal protein S11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    22886712..22888729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791496.3 → XP_015646982.1  small ribosomal subunit protein uS17

    UniProtKB/TrEMBL
    A0A8I3B3E5, A2XXG3, B8AU50, Q0D5F2, Q0JA67, Q7XIK5, Q7XLD0, Q8H4T5
    Conserved Domains (1) summary
    PTZ00241
    Location:1 → 145
    PTZ00241; 40S ribosomal protein S11; Provisional
Nucleotide Protein
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