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LOC9270842 xyloglucan galactosyltransferase KATAMARI1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9270842, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9270842
Gene description
xyloglucan galactosyltransferase KATAMARI1 homolog
Locus tag
OSNPB_120572700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC9270842 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24292892..24294816)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23602729..23604665)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich SC35-like splicing factor SCL30 Neighboring gene factor of DNA methylation 1 Neighboring gene uncharacterized LOC4352592 Neighboring gene uncharacterized LOC4352593

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan galactosyltransferase KATAMARI1 homolog
Names
Os12g0572700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    24292892..24294816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026021758.2 → XP_025877543.1  xyloglucan galactosyltransferase KATAMARI1 homolog

    UniProtKB/TrEMBL
    C7J9Z7, Q2QNA7
    Conserved Domains (1) summary
    pfam03016
    Location:111 → 451
    Exostosin; Exostosin family
Nucleotide Protein
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