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LOC9270399 DNA-directed RNA polymerase I subunit 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9270399, updated on 17-Jul-2024

Summary

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Gene symbol
LOC9270399
Gene description
DNA-directed RNA polymerase I subunit 1
Locus tag
OSNPB_060612200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PolA1
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Genomic context

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See LOC9270399 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25273902..25289003)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24411901..24427041)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene nucleosome assembly protein 1-4 Neighboring gene glycine dehydrogenase (decarboxylating), mitochondrial Neighboring gene zinc finger protein WIP2 Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase I activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit 1
Names
Os06g0612200
P0429G06.12
RNA polymerase I largest subunit
putative RNA polymerase A(I) large subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25273902..25289003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788054.3 → XP_015643540.1  DNA-directed RNA polymerase I subunit 1

    UniProtKB/TrEMBL
    Q69X40
    Conserved Domains (2) summary
    PRK14977
    Location:10 → 1734
    PRK14977; bifunctional DNA-directed RNA polymerase A'/A'' subunit; Provisional
    cd01435
    Location:18 → 1086
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
Nucleotide Protein
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