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LOC9269493 soluble starch synthase 1, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9269493, updated on 10-Oct-2024

Summary

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Gene symbol
LOC9269493
Gene description
soluble starch synthase 1, chloroplastic/amyloplastic-like
Locus tag
OSNPB_060160700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SS1; SSI; SSS1
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Genomic context

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See LOC9269493 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3239369..3247118, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3079058..3086803, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor CRF1 Neighboring gene uncharacterized LOC4340206 Neighboring gene uncharacterized LOC4340208 Neighboring gene uncharacterized LOC112939315

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A comparative evaluation of the effect of SSI and Wx allelic variation on rice grain quality and starch physicochemical properties.
    Title: A comparative evaluation of the effect of SSI and Wx allelic variation on rice grain quality and starch physicochemical properties.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 1, chloroplastic/amyloplastic
Names
LOC_Os06g06560
P0681F10.13
SSS 1
Starch synthase I
soluble starch synthase I
NP_001411225.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424296.1 → NP_001411225.1  soluble starch synthase 1, chloroplastic/amyloplastic

    Status: VALIDATED

    Source sequence(s)
    AK109458, AU075475, CI454909
    UniProtKB/Swiss-Prot
    B7F2B2, Q0DEC8
    UniProtKB/TrEMBL
    D0TZM7, D3U2H8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    3239369..3247118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DEC8.1 GenPept UniProtKB/Swiss-Prot:Q0DEC8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials