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LOC9269152 cellulose synthase-like protein E6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9269152, updated on 10-Oct-2024

Summary

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Gene symbol
LOC9269152
Gene description
cellulose synthase-like protein E6
Locus tag
OSNPB_090478300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CSLE6; OsCslE6
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Genomic context

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See LOC9269152 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22699541..22705922, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18315976..18322384, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347368 Neighboring gene cellulose synthase-like protein E6 Neighboring gene cellulose synthase-like protein E1 Neighboring gene uncharacterized LOC4347372 Neighboring gene serine/threonine-protein kinase D6PK

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein E6
Names
LOC_Os09g30130
Os09g0478200
P0556A05.32
putative cellulose synthase-like protein OsCslE1
NP_001411783.1
XP_015611689.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424854.1 → NP_001411783.1  cellulose synthase-like protein E6

    Status: VALIDATED

    Source sequence(s)
    AK242585, AP014965, CI428687, CI438801
    UniProtKB/Swiss-Prot
    Q0J0Y1, Q651X6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    22699541..22705922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756203.3 → XP_015611689.1  cellulose synthase-like protein E6 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XNV5
    Conserved Domains (1) summary
    cl30825
    Location:2 → 636
    PLN02893; Cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q651X6.1 GenPept UniProtKB/Swiss-Prot:Q651X6

Gene LinkOut

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Molecular Biology Databases
Research Materials