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ATP6AP1L ATPase H+ transporting accessory protein 1 like (pseudogene) [ Homo sapiens (human) ]

Gene ID: 92270, updated on 5-Mar-2024

Summary

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Official Symbol
ATP6AP1Lprovided by HGNC
Official Full Name
ATPase H+ transporting accessory protein 1 like (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:28091
See related
AllianceGenome:HGNC:28091
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in regulation of cellular pH. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis (RPKM 1.6), skin (RPKM 1.0) and 25 other tissues See more
Orthologs
all
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Genomic context

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See ATP6AP1L in Genome Data Viewer
Location:
5q14.2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (82278650..82318806)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (82764440..82804585)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (81574469..81614625)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene autophagy related 10 Neighboring gene RNA, 7SL, cytoplasmic 378, pseudogene Neighboring gene Sharpr-MPRA regulatory region 9633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22735 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:81569855-81570549 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:81570550-81571243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22736 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:81590121-81590923 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:81589318-81590120 Neighboring gene ribosomal protein S23 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:81648113-81649312 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:81652406-81653605 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:81661015-81662214 Neighboring gene uncharacterized LOC124901019 Neighboring gene MPRA-validated peak5317 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:81819418-81819955 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:81839635-81840222 Neighboring gene NANOG hESC enhancer GRCh37_chr5:81886910-81887451 Neighboring gene uncharacterized LOC105379050

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. An analysis of gene expression in PTSD implicates genes involved in the glucocorticoid receptor pathway and neural responses to stress. Logue MW, et al. Psychoneuroendocrinology, 2015 Jul. PMID 25867994, Free PMC Article
  2. Identification of genes related to Parkinson's disease using expressed sequence tags. Kim JM, et al. DNA Res, 2006 Dec 31. PMID 17213182
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. found significant associations with PTSD for 7 of the 41 (p<0.05), one of which (ATP6AP1L) survived multiple-testing correction
    Title: An analysis of gene expression in PTSD implicates genes involved in the glucocorticoid receptor pathway and neural responses to stress.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Other Names

  • ATPase, H+ transporting, lysosomal accessory protein 1-like
  • V-type proton ATPase subunit S1-like protein
  • vacuolar proton pump subunit S1-like protein

Clone Names

  • FLJ41309, MGC138396

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169868.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  2. NR_169870.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  3. NR_169871.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  4. NR_172106.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  5. NR_172107.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  6. NR_172108.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  7. NR_172109.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  8. NR_172110.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  9. NR_172111.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  10. NR_172112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  11. NR_172113.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  12. NR_172114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  13. NR_172115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  14. NR_172116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  15. NR_172117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  16. NR_172118.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  17. NR_172119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  18. NR_172120.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  19. NR_172121.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

  20. NR_172122.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    82278650..82318806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    82764440..82804585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001017971.4: Suppressed sequence

    Description
    NM_001017971.4: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  2. NM_001039779.1: Suppressed sequence

    Description
    NM_001039779.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.

  3. NM_001349371.3: Suppressed sequence

    Description
    NM_001349371.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  4. NM_001349372.3: Suppressed sequence

    Description
    NM_001349372.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  5. NM_001349373.3: Suppressed sequence

    Description
    NM_001349373.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  6. NM_001349374.3: Suppressed sequence

    Description
    NM_001349374.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  7. NM_001386086.1: Suppressed sequence

    Description
    NM_001386086.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  8. NM_001386087.1: Suppressed sequence

    Description
    NM_001386087.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  9. NM_001386089.1: Suppressed sequence

    Description
    NM_001386089.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  10. NM_001386090.1: Suppressed sequence

    Description
    NM_001386090.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  11. NM_001386091.1: Suppressed sequence

    Description
    NM_001386091.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  12. NM_001386092.1: Suppressed sequence

    Description
    NM_001386092.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  13. NM_001386097.1: Suppressed sequence

    Description
    NM_001386097.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  14. NM_001386099.1: Suppressed sequence

    Description
    NM_001386099.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  15. NM_001386101.1: Suppressed sequence

    Description
    NM_001386101.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  16. NM_001386102.1: Suppressed sequence

    Description
    NM_001386102.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  17. NM_001386103.1: Suppressed sequence

    Description
    NM_001386103.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  18. NM_001386105.1: Suppressed sequence

    Description
    NM_001386105.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  19. NM_001386107.1: Suppressed sequence

    Description
    NM_001386107.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  20. NM_001386110.1: Suppressed sequence

    Description
    NM_001386110.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  21. NM_001386111.1: Suppressed sequence

    Description
    NM_001386111.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  22. NM_001386114.1: Suppressed sequence

    Description
    NM_001386114.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  23. NM_001386115.1: Suppressed sequence

    Description
    NM_001386115.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  24. NM_001386116.1: Suppressed sequence

    Description
    NM_001386116.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  25. NM_001386117.1: Suppressed sequence

    Description
    NM_001386117.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  26. NM_001386118.1: Suppressed sequence

    Description
    NM_001386118.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  27. NM_001386119.1: Suppressed sequence

    Description
    NM_001386119.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  28. NM_001386120.1: Suppressed sequence

    Description
    NM_001386120.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  29. NM_001386121.1: Suppressed sequence

    Description
    NM_001386121.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  30. NM_001386122.1: Suppressed sequence

    Description
    NM_001386122.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  31. NM_001386123.1: Suppressed sequence

    Description
    NM_001386123.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  32. NM_001386124.1: Suppressed sequence

    Description
    NM_001386124.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
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