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RDN25-1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164935, updated on 2-Nov-2024

Summary

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Official Symbol
RDN25-1
Primary source
SGD:S000006484
Locus tag
YNCL0012C
See related
AllianceGenome:SGD:S000006484
Gene type
rRNA
RNA name
25S ribosomal RNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to be a structural constituent of ribosome. Involved in gene expression and regulation of translational fidelity. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See RDN25-1 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (451786..455181, complement)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene tRNA-Gln Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene Tar1p Neighboring gene miscRNA Neighboring gene 5.8S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001144.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [Identification of microorganism from traditional Chinese medicine Massa Medicata Fermentata]. Zhang L, et al. Zhongguo Zhong Yao Za Zhi, 2012 Jul. PMID 23019872
  2. A translational fidelity mutation in the universally conserved sarcin/ricin domain of 25S yeast ribosomal RNA. Liu R, et al. RNA, 1996 Mar. PMID 8608449, Free PMC Article
  3. Variable regions V13 and V3 of Saccharomyces cerevisiae contain structural features essential for normal biogenesis and stability of 5.8S and 25S rRNA. Jeeninga RE, et al. RNA, 1997 May. PMID 9149229, Free PMC Article
  4. Direct profiling of the yeast dynamics in wine fermentations. Cocolin L, et al. FEMS Microbiol Lett, 2000 Aug 1. PMID 10913870
  5. Yeasts present during spontaneous fermentation of Lake Erie Chardonnay, Pinot Gris and Riesling. van Keulen H, et al. Antonie Van Leeuwenhoek, 2003. PMID 12785308

See all (73) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

  • 25S ribosomal RNA (25S rRNA); component of the large (60S) ribosomal subunit; encoded in the rDNA repeat (RDN1) as part of the 35S primary transcript; formed by endonucleolytic cleavage at the C2 site of internal transcribed spacer 2 (ITS2)

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of translational fidelity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translational elongation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translational initiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit TAS
Traceable Author Statement
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    451786..455181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132209.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Molecular Biology Databases
Research Materials