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yafK L,D-transpeptidase-related protein [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 914338, updated on 6-Jun-2024

Summary

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Gene symbol
yafK
Gene description
L,D-transpeptidase-related protein
Locus tag
ECs_0251
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (283033..283773, complement)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene acyl coenzyme A dehydrogenase Neighboring gene D-sedoheptulose 7-phosphate isomerase Neighboring gene type 2 glutamine amidotransferase family protein Neighboring gene predicted toxin of the YafQ-DinJ toxin-antitoxin system Neighboring gene antitoxin of YafQ-DinJ toxin-antitoxin system

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
L,D-transpeptidase-related protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    283033..283773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_308278.1 L,D-transpeptidase-related protein [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_308278.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A765T9T1
    Conserved Domains (1) summary
    COG3034
    Location:1 → 246
    YafK; Murein L,D-transpeptidase YafK [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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