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ridA reactive intermediate/imine deaminase [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 913846, updated on 10-Oct-2024

Summary

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Gene symbol
ridA
Gene description
reactive intermediate/imine deaminase
Locus tag
ECs_5220
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (5326192..5326578, complement)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene trehalose 6-phosphate-inducible trehalose regulon transcriptional repressor Neighboring gene magnesium transporter Neighboring gene aspartate carbamoyltransferase regulatory subunit Neighboring gene aspartate carbamoyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
reactive intermediate/imine deaminase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    5326192..5326578 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_313247.2 reactive intermediate/imine deaminase [Escherichia coli O157:H7 str. Sakai]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAJ3TZ02, A0AAN3MAC5, A0AAP7VQZ2, E1J8Q8, Q8XCD0
    Conserved Domains (1) summary
    cl10015
    Location:1 → 127
    YjgF_YER057c_UK114_family; YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no ...
Nucleotide Protein
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