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vapB type II toxin-antitoxin system VapB family antitoxin [ Citrobacter portucalensis ]

Gene ID: 86978872, updated on 10-Oct-2024

Summary

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Gene symbol
vapB
Gene description
type II toxin-antitoxin system VapB family antitoxin
Locus tag
LY264_RS24830
Gene type
protein coding
Organism
Citrobacter portucalensis (strain: Cf7303, nat-host: Homo sapiens)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex
Old locus tag
LY264_24825
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Genomic context

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Location:
plasmid: unnamed1

NZ_CP092467.1Genomic Context describing neighboring genes Neighboring gene sugar ABC transporter ATP-binding protein Neighboring gene ribose ABC transporter permease Neighboring gene hypothetical protein Neighboring gene carbohydrate kinase Neighboring gene type II toxin-antitoxin system VapC family toxin Neighboring gene helicase UvrD Neighboring gene IS6-like element IS26 family transposase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP092467.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural Determinants for Antitoxin Identity and Insulation of Cross Talk between Homologous Toxin-Antitoxin Systems. Walling LR, et al. J Bacteriol, 2016 Dec 15. PMID 27672196, Free PMC Article
  2. Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA. Winther KS, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21502523, Free PMC Article
  3. Genetic Characterization of bla (NDM-1)-Carrying Citrobacter portucalensis Sequence Type 328 and Citrobacter freundii Sequence Type 98. Wang L, et al. Infect Drug Resist, 2022. PMID 35510156, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
type II toxin-antitoxin system VapB family antitoxin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP092467.1 Reference assembly

    Range
    33964..34194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_001261276.1 MULTISPECIES: type II toxin-antitoxin system VapB family antitoxin [Gammaproteobacteria]

    See identical proteins and their annotated locations for WP_001261276.1

    UniProtKB/TrEMBL
    A0A0F4ZPX4, A0A1J7ZG89, A0A1W6C1P1, A0A2I7QG10, A0A387K023, A0A3N0N5H5, A0A3Q8DD50, A0A3R0EXI7, A0A3S5I3L3, A0A485C7M5, A0A5V9HHH2, A0A6C0NE33, A0A740S4F0, A0A9P0U669, A0A9Q9P2M0, A0AA96RW04, A0AAE2JGV2, A0AAE3RMK9, A0AAE4EC41, A0AAE5MAY9, A0AAN1YB48, A0AAP0Z165, A0AAP4MJB6, A0AAP5PRE1, A0AAP8KLE2, A1YWL0, B5RK79, B7L3V9, J6I6T1, K0H7U9, Q84A07, R9WW56, W1DHX3
Nucleotide Protein
Heading Accession and Version

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