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psmD1 26S proteasome non-ATPase regulatory subunit 1 [ Dictyostelium discoideum AX4 ]

Gene ID: 8626381, updated on 18-Sep-2024

Summary

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Official Symbol
psmD1
Official Full Name
26S proteasome non-ATPase regulatory subunit 1
Primary source
dictyBase:DDB_G0287953
Locus tag
DDB_G0287953
See related
AmoebaDB:DDB_G0287953; VEuPathDB:DDB_G0287953
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0187705; DDBDRAFT_0232977; DDB_0187705; DDB_0232977
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_007091.3 (881632..884917, complement)

Chromosome 5 - NC_007091.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene NEDD8-activating enzyme E1 regulatory subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007091.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATG16 mediates the autophagic degradation of the 19S proteasomal subunits PSMD1 and PSMD2. Xiong Q, et al. Eur J Cell Biol, 2018 Nov. PMID 30269947
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables endopeptidase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in autophagosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in lysosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome regulatory particle, base subcomplex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in proteasome storage granule IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 1
Names
26S proteasome regulatory subunit S1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007091.3 Reference assembly

    Range
    881632..884917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_631880.1 → XP_636972.1  26S proteasome regulatory subunit S1 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_636972.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54JM5
    Conserved Domains (3) summary
    COG5116
    Location:4 → 973
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    pfam01851
    Location:465 → 499
    PC_rep; Proteasome/cyclosome repeat
    sd00044
    Location:588 → 613
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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