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clp1 pre-mRNA cleavage complex subunit [ Dictyostelium discoideum AX4 ]

Gene ID: 8625143, updated on 18-Sep-2024

Summary

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Official Symbol
clp1
Official Full Name
pre-mRNA cleavage complex subunit
Primary source
dictyBase:DDB_G0285507
Locus tag
DDB_G0285507
See related
AmoebaDB:DDB_G0285507; VEuPathDB:DDB_G0285507
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0186537; DDBDRAFT_0235305; DDB_0186537; DDB_0235305
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_007090.3 (3327387..3328942, complement)

Chromosome 4 - NC_007090.3Genomic Context describing neighboring genes Neighboring gene dynactin 50 kDa subunit Neighboring gene inositol-3-phosphate synthase Neighboring gene branched-chain amino acid aminotransferase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007090.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables polynucleotide 5'-hydroxyl-kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables polynucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pre-mRNA cleavage complex subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007090.3 Reference assembly

    Range
    3327387..3328942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_633003.1 → XP_638095.1  pre-mRNA cleavage complex subunit [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_638095.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54N48
    Conserved Domains (4) summary
    COG5623
    Location:54 → 458
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam06807
    Location:347 → 458
    Clp1; Pre-mRNA cleavage complex II protein Clp1
    pfam16573
    Location:49 → 137
    CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor
    pfam16575
    Location:153 → 340
    CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
Nucleotide Protein
Heading Accession and Version

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