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poxA [ Dictyostelium discoideum AX4 ]

Gene ID: 8620966, updated on 22-Aug-2024

Summary

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Official Symbol
poxA
Primary source
dictyBase:DDB_G0277275
Locus tag
DDB_G0277275
See related
AmoebaDB:DDB_G0277275; VEuPathDB:DDB_G0277275
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0191269; DDBDRAFT_0215181; DDB_0191269; DDB_0215181
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_007088.5 (7857099..7858927, complement)

Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ATPase, P-type cation exchange, alpha subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007088.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Secreted heme peroxidase from Dictyostelium discoideum: Insights into catalysis, structure, and biological role. Nicolussi A, et al. J Biol Chem, 2018 Jan 26. PMID 29242189, Free PMC Article
  2. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
  3. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables heme binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables iodide peroxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables lactoperoxidase activity IEA
Inferred from Electronic Annotation
more info
  
enables peroxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables peroxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
  
enables thiocyanate peroxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular oxidant detoxification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within immune response ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
involved_in thiocyanate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
animal heme peroxidase family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007088.5 Reference assembly

    Range
    7857099..7858927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_637683.1 → XP_642775.1  hypothetical protein DDB_G0277275 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_642775.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54ZU1, Q6TMK4
    Conserved Domains (2) summary
    cd09822
    Location:64 → 530
    peroxinectin_like_bacterial; Uncharacterized family of heme peroxidases, mostly bacterial
    pfam03098
    Location:24 → 522
    An_peroxidase; Animal haem peroxidase
Nucleotide Protein
Heading Accession and Version

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