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psmC1 26S protease regulatory subunit 4 [ Dictyostelium discoideum AX4 ]

Gene ID: 8617698, updated on 17-May-2024

Summary

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Gene symbol
psmC1
Gene description
26S protease regulatory subunit 4
Primary source
dictyBase:DDB_G0270784
Locus tag
DDB_G0270784
See related
AmoebaDB:DDB_G0270784; VEuPathDB:DDB_G0270784
Gene type
protein coding
RNA name
26S proteasome ATPase 1 subunit
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0202018; DDBDRAFT_0232964; DDB_0202018; DDB_0232964
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_007087.3 (4684536..4685855, complement)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene myb domain-containing protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Growth and developmental functions of a human immunodeficiency virus Tat-binding protein/26S protease subunit homolog from Dictyostelium discoideum. Cao JG, et al. Mol Cell Biol, 1995 Mar. PMID 7862164, Free PMC Article
  2. Proteomic analysis of Legionella-containing phagosomes isolated from Dictyostelium. Shevchuk O, et al. Int J Med Microbiol, 2009 Nov. PMID 19482547
  3. Proteomics fingerprinting of phagosome maturation and evidence for the role of a Galpha during uptake. Gotthardt D, et al. Mol Cell Proteomics, 2006 Dec. PMID 16926386
  4. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables proteasome-activating activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mitotic cytokinesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within sorocarp development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in phagocytic vesicle HDA PubMed 
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome regulatory particle, base subcomplex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Names
26S protease regulatory subunit 4
26S proteasome ATPase 1 subunit
TAT binding protein alpha

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    4684536..4685855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_641634.1 → XP_646726.1  26S proteasome ATPase 1 subunit [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_646726.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q55BV5, Q9TX40
    Conserved Domains (2) summary
    PTZ00361
    Location:1 → 439
    PTZ00361; 26 proteosome regulatory subunit 4-like protein; Provisional
    pfam00004
    Location:221 → 354
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
Heading Accession and Version

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