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ECU06_1040 uncharacterized protein [ Encephalitozoon cuniculi GB-M1 ]

Gene ID: 859285, updated on 10-Oct-2024

Summary

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Gene symbol
ECU06_1040
Gene description
uncharacterized protein
Locus tag
ECU06_1040
See related
MicrosporidiaDB:ECU06_1040; VEuPathDB:ECU06_1040
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Encephalitozoon cuniculi GB-M1 (isolate: GB-M1)
Lineage
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon
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Genomic context

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See ECU06_1040 in Genome Data Viewer
Location:
chromosome: VI
Exon count:
1
Sequence:
Chromosome: VI; NC_003233.1 (142301..142942, complement)

Chromosome VI - NC_003233.1Genomic Context describing neighboring genes Neighboring gene Myb-like transcription factor Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene U2-type spliceosomal complex subunit CWC24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003233.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. Peyretaillade E, et al. BMC Genomics, 2009 Dec 15. PMID 20003517, Free PMC Article
  2. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Katinka MD, et al. Nature, 2001 Nov 22. PMID 11719806
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-ribulose-phosphate 3-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_585860.2
  • 06_1040, D-RIBULOSE 5 PHOSPHATE 3 EPIMERASE, RPE_METJA, gene found by Glimmer

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003233.1 Reference assembly

    Range
    142301..142942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001041482.2 → NP_585860.2  uncharacterized protein ECU06_1040 [Encephalitozoon cuniculi GB-M1]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q8SRP6
Nucleotide Protein
Heading Accession and Version

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